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Ulelab

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  1. clipplotr clipplotr Public

    A tool to facilitate comparative visualisation of CLIP data

    R 18 5

  2. ultraplex ultraplex Public

    Ultra-fast 5' and 3' demultiplexer

    Python 31 12

  3. clippy clippy Public

    A wrapper around scipy "find_peaks" function to enable peak calling of CLIP data.

    Python 4

  4. peka peka Public

    Find motifs enriched around prominent crosslinks

    Python 7 2

  5. iCount-Mini iCount-Mini Public

    Forked from genialis/iCount

    iCount, protein-RNA interaction analytics

    Python 1 1

Repositories

Showing 10 of 34 repositories
  • RBPeek Public

    merge crosslinks files and intersect with BED for broad binding analysis and metaprofiling

    ulelab/RBPeek's past year of commit activity
    Python 0 0 0 0 Updated Sep 16, 2026
  • hnRNPH1_IR Public

    Exploring intron retention in HNRNPH1 and globally using multiple sequence alignment, intron retention scores, SpliceAI splice site strength inferences

    ulelab/hnRNPH1_IR's past year of commit activity
    HTML 0 0 0 0 Updated Sep 16, 2026
  • PRMT-APA Public
    ulelab/PRMT-APA's past year of commit activity
    HTML 2 0 0 0 Updated Aug 8, 2026
  • iCount-Mini Public Forked from genialis/iCount

    iCount, protein-RNA interaction analytics

    ulelab/iCount-Mini's past year of commit activity
    Python 1 MIT 27 2 0 Updated Jul 29, 2026
  • protocol-template Public template

    Reusable template for lab protocols.

    ulelab/protocol-template's past year of commit activity
    Python 6 MIT 0 3 0 Updated Jul 28, 2026
  • rna_maps Public

    Plot CLIP crosslinks around regulated exons to study position-dependent impact on pre-mRNA splicing.

    ulelab/rna_maps's past year of commit activity
    Python 1 3 0 0 Updated Jul 24, 2026
  • flow.bio-paper-code Public

    Code for analyses presented in the Flow.bio paper

    ulelab/flow.bio-paper-code's past year of commit activity
    HTML 0 0 0 0 Updated Jun 22, 2026
  • flowAPIscripts Public

    build out scripts for upload, data download, trigger analysis

    ulelab/flowAPIscripts's past year of commit activity
    Python 0 0 0 0 Updated Jun 19, 2026
  • intron_retention_propensity Public

    Data, scripts, and figures pertaining to the exploration of intron retention across curated datasets for cell-type and developmental-stage specific interrogation

    ulelab/intron_retention_propensity's past year of commit activity
    HTML 0 0 0 0 Updated Jan 6, 2026
  • interstasis-paper Public

    A repository containing the code for Faraway et al. (2025).

    ulelab/interstasis-paper's past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Jul 21, 2025
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