BSR-Based Allele Calling Algorithm
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
Collection of scripts for bacterial genomics
Fast k-mer based tool for multi locus sequence typing (MLST)
EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic research.
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
An easy way of MLSTyping your genomes in R.
MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
A species‑specific bioinformatics suite for rapid and accessible Pseudomonas aeruginosa genomic analysis
List and download schemes from pubMLST.org and other BIGSDB servers
In silico multi-locus sequence typing (MLST) for bacterial genomes
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
Ultra-fast SNP/indel-level distance calculator for core and whole genome MLST (cg/wgMLST) analysis in bacterial genomics
Rapid, in silico characterization of Bacillus cereus group isolates using WGS data
Kleboscope is A gene‑centric, species‑optimized computational pipeline for comprehensive Klebsiella pneumoniae genomic surveillance
stringMLST datasets
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