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Pull requests: rust-bio/rust-bio

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Pull requests list

chore(master): release 4.0.2 autorelease: pending
#693 opened Sep 16, 2026 by github-actions Bot Loading…
feat!: allow swaps and configuration of indel support in ukkonen's pattern matching algorithm; remove non-reasonable traits from the Ukkonen struct
#692 opened Sep 16, 2026 by johanneskoester Contributor Loading…
10
fix: correct backward HMM transition indices
#689 opened Sep 2, 2026 by RegularJoe-CEO Contributor Loading…
2
deps: update enum-map requirement from >=0.6.4, <3 to >=0.6.4, <4 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#684 opened Jul 27, 2026 by dependabot Bot Loading…
ci: Add doctests to rust.yml
#626 opened Feb 24, 2025 by fxwiegand Contributor Loading…
14
fix: out of index fix for one character sequence inputs POA
#605 opened Sep 26, 2024 by lorewar2 Member • Draft
4
feat: added parser for bionano custom file formats
#603 opened Sep 12, 2024 by laurakuehle • Draft
43
refactor: imports
#600 opened Aug 5, 2024 by Guelakais Loading…
8
chore: fix cargo tarpaulin usage
#554 opened Sep 13, 2023 by johanneskoester Contributor Loading…
feat: Blastn with http request review wanted
#539 opened Jul 5, 2023 by CaroCardozo Loading…
3
feat: Addition of Transcribe and Translate features
#527 opened Jun 12, 2023 by Cardosaum • Draft
1
1
docs: Documenting expand kmer help wanted
#507 opened Nov 28, 2022 by Ptipiak Contributor Loading…
1
feat: allow iteration over posteriors in Bayesian model
#463 opened Nov 16, 2021 by johanneskoester Contributor Loading…
1
refactor: Using submodules as features
#460 opened Nov 12, 2021 by luiz10x Contributor Loading…
3
widen ndarray dependency and fix warning help wanted
#429 opened May 19, 2021 by DavidBJaffe Contributor Loading…
2
feat: allow gap penalties to be a function of position on reference review wanted
#424 opened Apr 21, 2021 by DavidBJaffe Contributor Loading…
1
Last record of fastq file being incomplete has the possibility to deadlock. help wanted
#387 opened Oct 19, 2020 by wtzhang23 Loading…
2
Wrap comments
#383 opened Oct 5, 2020 by TianyiShi2001 Member Loading…
Improve lib rs WIP
#382 opened Oct 3, 2020 by TianyiShi2001 Member • Draft
3 tasks
1
Reimplement the current alignment::Aligner without breaking API WIP
#379 opened Oct 3, 2020 by TianyiShi2001 Member Loading…
4
Add issue and PR templates
#373 opened Sep 30, 2020 by TianyiShi2001 Member Loading…
3 tasks
1
improve alignment::distance::levenshtein enhancement
#365 opened Sep 17, 2020 by TianyiShi2001 Member Loading…
12
Package only files that are needed.
#361 opened Sep 14, 2020 by TianyiShi2001 Member Loading…
2
faster substitution matrix lookup; more matrices enhancement
#356 opened Sep 8, 2020 by TianyiShi2001 Member Loading…
14
Reimplement Pairwise Alignment Algorithms new feature
#355 opened Sep 8, 2020 by TianyiShi2001 Member • Draft
24
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