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Pull requests: nf-core/modules

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Pull requests list

new module: mgnifam/updatefamilies size/xl
#12985 opened Sep 17, 2026 by vagkaratzas Contributor Loading…
12 of 14 tasks
2
Bump sentieon modules size/xl
#12983 opened Sep 16, 2026 by bagnacan Contributor Loading…
5 tasks done
2
bump(salmon): update salmon/index and salmon/quant to 2.7.0
#12979 opened Sep 16, 2026 by pinin4fjords Member Loading…
15
Add custom/taxonomytree module and taxonomy2phylogeny subworkflow
#12977 opened Sep 16, 2026 by erikrikarddaniel Member Loading…
13 of 17 tasks
8
Migrate openms to topics Ready for Review
#12975 opened Sep 15, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
1
3
Migrate imc2mc to topics conda-fail
#12972 opened Sep 15, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
1
1
freyja: update to 2.0.4
#12964 opened Sep 15, 2026 by pditommaso Contributor Loading…
3 tasks done
Smudgeplot all size/m
#12960 opened Sep 15, 2026 by DLBPointon Contributor Loading…
@DLBPointon
metaproviz/internalstandard module #12957
#12958 opened Sep 15, 2026 by ChristinaSchmidt1 Loading…
17 tasks
1
Update to topic universc
#12955 opened Sep 14, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
3
Added new module arcane/express
#12952 opened Sep 14, 2026 by LeonHornich Contributor Loading…
12 of 14 tasks
Add crabs/merge module
#12930 opened Sep 13, 2026 by xHaMMaDy Contributor • Draft
14 tasks done
1
fix(manta): pin working biocontainer to avoid segfault
#12929 opened Sep 11, 2026 by kanishkanandhkumar Loading…
1 of 2 tasks
1
1
New module: motifmatchr/matchmotifs
#12927 opened Sep 10, 2026 by PFRoux Contributor Loading…
1
New module: tobias/bindetect
#12925 opened Sep 10, 2026 by PFRoux Contributor Loading…
1
New module: tobias/scorebigwig
#12923 opened Sep 10, 2026 by PFRoux Contributor Loading…
1
5
New module: mgatk/call
#12919 opened Sep 10, 2026 by PFRoux Contributor Loading…
1
4
Add sativaepang/* modules: reference, lootasks, looplace, looscore
#12910 opened Sep 9, 2026 by erikrikarddaniel Member Loading…
13 of 14 tasks
31
CI: test composite change detection action
#12898 opened Sep 7, 2026 by adamrtalbot Contributor • Draft
3 of 7 tasks
fix(clustalo/align): wait for compression and propagate pigz failures
#12894 opened Sep 6, 2026 by dnncha Loading…
8
Update fastaguard to 1.0.0
#12892 opened Sep 5, 2026 by ehsanestaji Contributor • Draft
6 of 7 tasks
New module: xengsort/classify Ready for Review
#12864 opened Sep 1, 2026 by LeonHornich Contributor Loading…
12 of 14 tasks
5
Update pre-commit hooks size/xs
#12860 opened Sep 1, 2026 by renovate Bot Loading…
2 tasks
Add STAR Suite alignment and genome generation modules
#12826 opened Aug 27, 2026 by lhhunghimself Loading…
11 of 12 tasks
1
Add parabricks/deepsomatic size/m
#12797 opened Aug 26, 2026 by SPPearce Contributor • Draft
3
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