The scripts align.pl, align.py and align.rb are example scripts to align two sequences and display the results in a format reminiscent of the .delta format. These scripts are very primitive and meant only as examples:

• no error handling
• they take two files containing sequences (no fasta format, only the sequence)
• the parameters to the aligner are hard coded

1. The Python script works with Python2 but seems to crash on Python3
2. The Perl binding doe not return the position of the indels in the alignment (delta array), only the general coordinates (SWIG problem?)