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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 44 6

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 38 14

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 22 3

  4. epidemics epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

    R 19 6

  5. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 17 5

  6. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 15 5

Repositories

Showing 10 of 70 repositories
  • epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    epiverse-trace/epiparameter's past year of commit activity
    R 38 14 48 (2 issues need help) 0 Updated Sep 16, 2026
  • epiparameterDB Public

    Database of epidemiological parameters

    epiverse-trace/epiparameterDB's past year of commit activity
    R 3 CC0-1.0 1 0 0 Updated Sep 15, 2026
  • tutorials Public
    epiverse-trace/tutorials's past year of commit activity
    R 3 7 48 (3 issues need help) 2 Updated Sep 15, 2026
  • tutorials-early Public

    Tutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.

    epiverse-trace/tutorials-early's past year of commit activity
    R 5 7 32 2 Updated Sep 15, 2026
  • superspreading Public

    Estimation of individual-level variation in transmission

    epiverse-trace/superspreading's past year of commit activity
    R 5 2 5 0 Updated Sep 7, 2026
  • simulist Public

    An R package for simulating line lists

    epiverse-trace/simulist's past year of commit activity
    R 11 1 7 1 Updated Sep 7, 2026
  • epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

    epiverse-trace/epidemics's past year of commit activity
    R 19 6 12 (1 issue needs help) 4 Updated Sep 1, 2026
  • tutorials-middle Public

    Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.

    epiverse-trace/tutorials-middle's past year of commit activity
    R 3 6 79 (3 issues need help) 1 Updated Aug 28, 2026
  • tutorials-late Public

    Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.

    epiverse-trace/tutorials-late's past year of commit activity
    R 2 5 50 0 Updated Aug 28, 2026
  • epichains Public

    Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

    epiverse-trace/epichains's past year of commit activity
    R 10 4 29 (3 issues need help) 5 Updated Aug 20, 2026