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collaborativebioinformatics

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  1. GeneVar GeneVar Public

    Jupyter Notebook 13 3

  2. Mosaicome Mosaicome Public

    Shell 13 3

  3. Sniphles Sniphles Public

    Sniphles is a read-based phasing approach for phased variant calling of structural variants.

    Python 12 2

  4. STRdust STRdust Public

    Python 12 3

  5. BioGraphRAG BioGraphRAG Public

    Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPTAC)

    Python 12 4

  6. nibSV nibSV Public

    Nim 9 4

Repositories

Showing 10 of 159 repositories
  • OMOP-federated-learning Public
    collaborativebioinformatics/OMOP-federated-learning's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 1 Updated Sep 17, 2026
  • Hello-World-Federated-Learning-for-Clinical-Diagnostics Public
    collaborativebioinformatics/Hello-World-Federated-Learning-for-Clinical-Diagnostics's past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 17, 2026
  • FedGX Public

    Repository for performing federated GWAS across biobanks

    collaborativebioinformatics/FedGX's past year of commit activity
    Python 1 MIT 1 0 0 Updated Sep 17, 2026
  • causal_inference_and_federation Public
    collaborativebioinformatics/causal_inference_and_federation's past year of commit activity
    0 MIT 0 0 0 Updated Sep 17, 2026
  • Bifrost Public
    collaborativebioinformatics/Bifrost's past year of commit activity
    Python 3 MIT 2 1 0 Updated Sep 17, 2026
  • ProGenome Public
    collaborativebioinformatics/ProGenome's past year of commit activity
    0 MIT 0 0 0 Updated Sep 17, 2026
  • Longitudinal_imaging_to_multimodality Public
    collaborativebioinformatics/Longitudinal_imaging_to_multimodality's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 17, 2026
  • SuperFedMMD Public

    Supercomputing-based Federated Multimodal Diagnostics

    collaborativebioinformatics/SuperFedMMD's past year of commit activity
    3 MIT 0 0 0 Updated Sep 17, 2026
  • Metametagraphs Public
    collaborativebioinformatics/Metametagraphs's past year of commit activity
    3 MIT 1 0 0 Updated Sep 17, 2026
  • HaploHash Public
    collaborativebioinformatics/HaploHash's past year of commit activity
    Python 3 MIT 1 0 0 Updated Sep 17, 2026
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