Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Type
/
to search
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
biojava
/
biojava
Public
Notifications
You must be signed in to change notification settings
Fork
397
Star
629
Code
Issues
66
Pull requests
3
Actions
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Security and quality
Insights
Commits
Breadcrumbs
History for
biojava
biojava-structure
src
test
on
master
User selector
All users
All time
Commit history
Commits on Dec 14, 2025
Refactor: fix SonarQube S1155 issues (#1079)
Pasjonat90D
committed
c0240dd
View commit details
Copy full SHA for c0240dd
View code at this point
Browse repository at this point
Commits on Jan 7, 2025
Javadoc fix: remaining errors in structure module. Mostly obsolete references
josemduarte
committed
2bbc824
View commit details
Copy full SHA for 2bbc824
View code at this point
Browse repository at this point
Commits on Jan 3, 2025
Use official url instead of github
josemduarte
committed
5ed782b
View commit details
Copy full SHA for 5ed782b
View code at this point
Browse repository at this point
Commits on Aug 30, 2024
Fix test result.
Show description for bfbe710
sbliven
committed
bfbe710
View commit details
Copy full SHA for bfbe710
View code at this point
Browse repository at this point
Add test for rcsb/symmetry#118
sbliven
committed
e9e0f00
View commit details
Copy full SHA for e9e0f00
View code at this point
Browse repository at this point
Commits on Jul 20, 2024
Obsolete test: mmtf.rcsb.org was discontinued
josemduarte
committed
335d0bb
View commit details
Copy full SHA for 335d0bb
View code at this point
Browse repository at this point
Commits on Apr 8, 2024
Fixing test
josemduarte
committed
266d835
View commit details
Copy full SHA for 266d835
View code at this point
Browse repository at this point
Commits on Mar 6, 2024
Merge pull request #1085 from josemduarte/miscfixes
Show description for f94e577
josemduarte
authored
f94e577
View commit details
Copy full SHA for f94e577
View code at this point
Browse repository at this point
Commits on Mar 4, 2024
Replacing home-made copy by Files.copy. Other minor fixes
josemduarte
committed
37b5fca
View commit details
Copy full SHA for 37b5fca
View code at this point
Browse repository at this point
Adding test case
josemduarte
committed
3e26abe
View commit details
Copy full SHA for 3e26abe
View code at this point
Browse repository at this point
Commits on Jan 5, 2024
Updating test
josemduarte
committed
a3d9437
View commit details
Copy full SHA for a3d9437
View code at this point
Browse repository at this point
Commits on May 12, 2023
Fixing empty seqres groups for cif files with no _entity
josemduarte
committed
6431114
View commit details
Copy full SHA for 6431114
View code at this point
Browse repository at this point
Fixing empty seqres groups for pdb files with not seqres
josemduarte
committed
12137bf
View commit details
Copy full SHA for 12137bf
View code at this point
Browse repository at this point
Commits on May 11, 2023
Handling nulls in descriptions
josemduarte
committed
a8a96ec
View commit details
Copy full SHA for a8a96ec
View code at this point
Browse repository at this point
New test
josemduarte
committed
3543eb9
View commit details
Copy full SHA for 3543eb9
View code at this point
Browse repository at this point
Commits on Apr 3, 2023
Fixing test after PDB id obsoletion
josemduarte
committed
5de0163
View commit details
Copy full SHA for 5de0163
View code at this point
Browse repository at this point
Commits on Jan 30, 2023
More nullpdbid tests (#1056)
Show description for 043eb40
josemduarte
and
sbliven
authored
043eb40
View commit details
Copy full SHA for 043eb40
View code at this point
Browse repository at this point
Merge pull request #1046 from BulkSecurityGeneratorProjectV2/fix/JLL/temporary_file_local_information_disclosure
Show description for 3747e5d
josemduarte
authored
3747e5d
View commit details
Copy full SHA for 3747e5d
View code at this point
Browse repository at this point
Commits on Nov 18, 2022
vuln-fix: Temporary File Information Disclosure
Show description for e3ecec5
JLLeitschuh
and
TeamModerne
committed
e3ecec5
View commit details
Copy full SHA for e3ecec5
View code at this point
Browse repository at this point
Commits on Oct 26, 2022
Switching to new DNS name for wwpdb http file server
josemduarte
committed
17a893f
View commit details
Copy full SHA for 17a893f
View code at this point
Browse repository at this point
Commits on Jun 20, 2022
update assembly file test to new location
sbittrich
committed
1f04caf
View commit details
Copy full SHA for 1f04caf
View code at this point
Browse repository at this point
Commits on Nov 24, 2021
Removing empy test
josemduarte
committed
2d98a5d
View commit details
Copy full SHA for 2d98a5d
View code at this point
Browse repository at this point
Commits on Oct 30, 2021
Avoiding test that fails often in github workflow
josemduarte
committed
f266c71
View commit details
Copy full SHA for f266c71
View code at this point
Browse repository at this point
Commits on Oct 29, 2021
Support extended pdbid (#950)
Show description for 12d348d
aalhossary
authored
12d348d
View commit details
Copy full SHA for 12d348d
View code at this point
Browse repository at this point
Commits on Oct 12, 2021
Adding test
josemduarte
committed
849d2b0
View commit details
Copy full SHA for 849d2b0
View code at this point
Browse repository at this point
Commits on Oct 1, 2021
Docs and test
josemduarte
committed
100705d
View commit details
Copy full SHA for 100705d
View code at this point
Browse repository at this point
Working implementation and tests
josemduarte
committed
82e1cee
View commit details
Copy full SHA for 82e1cee
View code at this point
Browse repository at this point
WIP towards having a template url system for chem comp downloader
josemduarte
committed
662ebc3
View commit details
Copy full SHA for 662ebc3
View code at this point
Browse repository at this point
Commits on Sep 30, 2021
Restoring a previously ignored test
aalhossary
committed
d0f2ef0
View commit details
Copy full SHA for d0f2ef0
View code at this point
Browse repository at this point
Commits on Sep 25, 2021
Update Scope version to 2.08
Show description for 47b07f2
aalhossary
committed
47b07f2
View commit details
Copy full SHA for 47b07f2
View code at this point
Browse repository at this point
Commits on Aug 23, 2021
Moving KeyWords to PDBHeader
Show description for 0913958
aalhossary
committed
0913958
View commit details
Copy full SHA for 0913958
View code at this point
Browse repository at this point
Commits on Aug 3, 2021
Smaller test file size
aalhossary
committed
840ca74
View commit details
Copy full SHA for 840ca74
View code at this point
Browse repository at this point
Commits on Jul 26, 2021
Parsed PDB KEWODS record
Show description for cc80fe9
aalhossary
committed
cc80fe9
View commit details
Copy full SHA for cc80fe9
View code at this point
Browse repository at this point
Commits on Jul 4, 2021
update junit3->junit4 test, remove doc references to ju3
Richard Adams
committed
704bda6
View commit details
Copy full SHA for 704bda6
View code at this point
Browse repository at this point
Commits on Jun 25, 2021
Merge pull request #935 from aalhossary/amr/fix932
Show description for a4d2038
josemduarte
authored
a4d2038
View commit details
Copy full SHA for a4d2038
View code at this point
Browse repository at this point
Previous
Next
You can’t perform that action at this time.