Commits

History for

Commits on Jul 29, 2026

Bugfix: parsing of mmCIF files with empty database_PDB_rev.date
josemduarte
committed
cb3019d

Commits on May 5, 2026

Adding safeguard, bug introduced in #1116 and reported in Biojava-l
josemduarte
committed
7c3909f

Commits on Dec 14, 2025

Refactor: fix SonarQube S1155 issues (#1079)
Pasjonat90D
committed
c0240dd

Commits on Dec 10, 2025

Merge pull request #1120 from biojava/sym-edgecase
josemduarte
authored
8edaed7

Commits on Dec 8, 2025

Merge pull request #1119 from Pasjonat90D/fix/use-isempty-instead-of-size-#1079
josemduarte
authored
70e9a74
Bugfix: edge-case with no equiv residues in alignment wasn't dealt with and led to IllegalArgumentException.
josemduarte
committed
423cd86

Commits on Nov 30, 2025

Fix #1079: Use isEmpty() instead of size() == 0
Pasjonat90D
committed
3f039fd

Commits on Nov 21, 2025

Fix RSPEC-1940 boolean checks
JasonKamsu
committed
0af196f

Commits on Nov 8, 2025

Fix for #1116
josemduarte
committed
274a36a

Commits on Mar 19, 2025

Safeguards
josemduarte
committed
7217ee8
More cleanup
josemduarte
committed
c33627f
More cleanup
josemduarte
committed
743a9fd
Formatting and docs cleanup
josemduarte
committed
381fedd

Commits on Mar 18, 2025

Update biojava-structure/src/main/java/org/biojava/nbio/structure/EntityType.java

josemduarte
and
sbittrich
authored
aa0d576

Commits on Mar 17, 2025

Make entity type case insensitive. Also improved docs
josemduarte
committed
501a09e

Commits on Mar 4, 2025

Update biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.java

josemduarte
and
sbittrich
authored
48cb462

Commits on Feb 28, 2025

Deal with missing strand_id
josemduarte
committed
2841770
Revert "Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref"
josemduarte
committed
fdf9864
Logging
josemduarte
committed
58136fe
Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref
josemduarte
committed
8286260
Deal with some missing fields in IHM
josemduarte
committed
a6723d4

Commits on Feb 27, 2025

Merge pull request #1106 from josemduarte/cifparsing-lenient
josemduarte
authored
77c2911

Commits on Feb 22, 2025

Review comment
josemduarte
committed
a5b46ab
Fix: first model is model index 0
josemduarte
committed
324319e

Commits on Jan 8, 2025

Merge pull request #1103 from josemduarte/cifparser-gemmifile
josemduarte
authored
f880d18

Commits on Jan 7, 2025

Commits on Jan 6, 2025