Commits

History for

Commits on Jan 3, 2025

Javadoc fix: html-like tag not allowed
josemduarte
committed
d104809

Commits on May 15, 2024

Fix issue s1319 Declarations should use Java collection interfaces on biojava-core
jlerbsc
committed
1ae6b52

Commits on Nov 18, 2022

vuln-fix: Temporary File Information Disclosure

JLLeitschuh
and
TeamModerne
committed
e3ecec5

Commits on Feb 1, 2022

Removing a utility tool that was really internal to biojava, but that was using external resources that are now gone.
josemduarte
committed
0e47572

Commits on Jun 9, 2021

Another https test fix
josemduarte
committed
7b76f8f

Commits on Feb 26, 2021

Address review comments.
heuermh
committed
71368be

Commits on Feb 22, 2021

Add copy constructor to FastqBuilder.
heuermh
committed
02b0ece

Commits on Jan 3, 2019

Automatically convert spaces to tabs
sbliven
committed
9ae2c4f
Remove trailing spaces from java files
sbliven
committed
405b005

Commits on Mar 15, 2018

Converting junit3 to 4, thanks intellij
josemduarte
committed
1458d85

Commits on Mar 14, 2018

Add license to all files
sbliven
committed
0e8c081

Commits on Mar 7, 2018

Unneeded imports
josemduarte
committed
1ba1ac7
Merging sequencing module into genome module as per #536
josemduarte
committed
59fd363

Commits on Aug 15, 2017

improvements
valasatava
committed
3e2be54
Setter for chromosome coordinate systems: 0-based, 1-based
valasatava
committed
b69ddfb
unit test fix
valasatava
committed
e5813e8
CDS length calculation bug fix
valasatava
committed
033d92e

Commits on Apr 26, 2017

Changing all line ending to unix (to match .gitattributes)
sbliven
committed
21ea32a

Commits on Apr 7, 2017

Get CDS ranges patch
valasatava
committed
b925bf9

Commits on Feb 24, 2017

Chromosome mapping tool: unit test to check handling multiple UTRs preceding the coding region
Yana Valasatava
committed
495e3f1
Unit tests for converting a genomic position to the position on mRNA for the genes leaving on the forward strand
Yana Valasatava
committed
5de7ea5

Commits on Feb 23, 2017

Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand
Yana Valasatava
committed
b42fd90

Commits on Aug 28, 2016

Merge pull request #567 from andviane/master
josemduarte
authored
75a5f59

Commits on Aug 25, 2016

More tests for issue #355
andviane
committed
b3142b9
Pulling in the @josemduarte test case for issue #355
andviane
committed
df1f905

Commits on Aug 18, 2016

making output less verbose
andreasprlic
committed
56e81e6
setting default log level to warn
andreasprlic
committed
07f244a

Commits on Jul 27, 2016

#534 addressing @joseduarte 's comments
andreasprlic
committed
d01e01e

Commits on Jul 26, 2016

Commits on Mar 9, 2016

Converting initial spaces to tabs.
sbliven
committed
2417c23
Removing template messages
sbliven
committed
2bb0271
Remove trailing whitespace globally from .java files
sbliven
committed
809312e
Running addlicense.sh
sbliven
committed
f4e725f

Commits on Dec 16, 2015

New test and implementing a proper equals for Location
josemduarte
committed
d144c9b