Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Type
/
to search
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
biojava
/
biojava
Public
Notifications
You must be signed in to change notification settings
Fork
397
Star
629
Code
Issues
66
Pull requests
3
Actions
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Security and quality
Insights
Commits
Breadcrumbs
History for
biojava
biojava-alignment
src
on
master
User selector
All users
All time
Commit history
Commits on Jan 3, 2025
Javadoc fix: all error in alignment module
josemduarte
committed
71fe179
View commit details
Copy full SHA for 71fe179
View code at this point
Browse repository at this point
Commits on Jun 12, 2024
Fix issue s1319 Declarations should use Java collection interfaces on biojava-core and dependencies
jlerbsc
committed
0f4983c
View commit details
Copy full SHA for 0f4983c
View code at this point
Browse repository at this point
Commits on May 15, 2024
Fix issue s1319 Declarations should use Java collection interfaces on biojava-core
jlerbsc
committed
1ae6b52
View commit details
Copy full SHA for 1ae6b52
View code at this point
Browse repository at this point
Commits on Apr 18, 2024
Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')
jlerbsc
committed
b182121
View commit details
Copy full SHA for b182121
View code at this point
Browse repository at this point
Commits on Feb 26, 2024
fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality
jlerbsc
committed
ac75f31
View commit details
Copy full SHA for ac75f31
View code at this point
Browse repository at this point
Commits on Jun 27, 2023
Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)
jlerbsc
committed
4a1863d
View commit details
Copy full SHA for 4a1863d
View code at this point
Browse repository at this point
Commits on May 21, 2023
Fix Sonar S1130 throws declarations should not be superfluous
jlerbsc
committed
86307e9
View commit details
Copy full SHA for 86307e9
View code at this point
Browse repository at this point
Commits on Jul 26, 2022
Test local, linear scheme alignment
aegugup
committed
2781293
View commit details
Copy full SHA for 2781293
View code at this point
Browse repository at this point
Fix pointers[y] is null error
Show description for bff5de7
aegugup
committed
bff5de7
View commit details
Copy full SHA for bff5de7
View code at this point
Browse repository at this point
Commits on Oct 21, 2021
Unifying the way ALHOSSARY is written across different platform
aalhossary
committed
5f7bb3f
View commit details
Copy full SHA for 5f7bb3f
View code at this point
Browse repository at this point
Commits on Jan 3, 2019
Automatically convert spaces to tabs
Show description for 9ae2c4f
sbliven
committed
9ae2c4f
View commit details
Copy full SHA for 9ae2c4f
View code at this point
Browse repository at this point
Commits on Jul 29, 2018
Merge branch 'issue712'
MikkelVestergaard
committed
15808d6
View commit details
Copy full SHA for 15808d6
View code at this point
Browse repository at this point
Commits on Jul 28, 2018
Made a couple of test platform independent
MikkelVestergaard
committed
eadd1ef
View commit details
Copy full SHA for eadd1ef
View code at this point
Browse repository at this point
Commits on Mar 15, 2018
Converting junit3 to 4, thanks intellij
josemduarte
committed
1458d85
View commit details
Copy full SHA for 1458d85
View code at this point
Browse repository at this point
Commits on Mar 12, 2018
Removing deprecations from v4
josemduarte
committed
9dbf83c
View commit details
Copy full SHA for 9dbf83c
View code at this point
Browse repository at this point
Commits on Mar 7, 2018
Warnings cleanup
josemduarte
committed
9b9837b
View commit details
Copy full SHA for 9b9837b
View code at this point
Browse repository at this point
Commits on Apr 26, 2017
Changing all line ending to unix (to match .gitattributes)
sbliven
committed
21ea32a
View commit details
Copy full SHA for 21ea32a
View code at this point
Browse repository at this point
Commits on Sep 8, 2016
Remove some unimplemented methods in phylo
lafita
committed
8494d94
View commit details
Copy full SHA for 8494d94
View code at this point
Browse repository at this point
Merge alignment and phylo modules #413
lafita
committed
ef81887
View commit details
Copy full SHA for ef81887
View code at this point
Browse repository at this point
Commits on Aug 18, 2016
making output less verbose
andreasprlic
committed
56e81e6
View commit details
Copy full SHA for 56e81e6
View code at this point
Browse repository at this point
setting default log level to warn
andreasprlic
committed
07f244a
View commit details
Copy full SHA for 07f244a
View code at this point
Browse repository at this point
Commits on Jul 1, 2016
Cleanup - squid:S1858 - "toString()" should never be called on a String object
Mohamed Ezzat
committed
082d860
View commit details
Copy full SHA for 082d860
View code at this point
Browse repository at this point
Commits on Jun 16, 2016
squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"
Mohamed Ezzat
committed
f3f7395
View commit details
Copy full SHA for f3f7395
View code at this point
Browse repository at this point
Commits on Jun 15, 2016
squid:S2063 - Comparators should be Serializable
Mohamed Ezzat
committed
23136cb
View commit details
Copy full SHA for 23136cb
View code at this point
Browse repository at this point
Commits on Apr 24, 2016
squid:S2178 - Short-circuit logic should be used in boolean contexts
Mohamed Ezzat
committed
837e844
View commit details
Copy full SHA for 837e844
View code at this point
Browse repository at this point
Commits on Mar 10, 2016
Light cleanup:
Show description for 38fbae1
sbliven
committed
38fbae1
View commit details
Copy full SHA for 38fbae1
View code at this point
Browse repository at this point
Running spacestotabs on recent changes
Show description for 5074cb2
sbliven
committed
5074cb2
View commit details
Copy full SHA for 5074cb2
View code at this point
Browse repository at this point
Commits on Mar 9, 2016
Merge branch 'master' into removeLoadChemCompInfo
Show description for d1b5c48
josemduarte
committed
d1b5c48
View commit details
Copy full SHA for d1b5c48
View code at this point
Browse repository at this point
Removing unnecessary casts
sbliven
committed
38934ac
View commit details
Copy full SHA for 38934ac
View code at this point
Browse repository at this point
More whitespace fixes
sbliven
committed
af59f90
View commit details
Copy full SHA for af59f90
View code at this point
Browse repository at this point
Removing unused imports
sbliven
committed
e6b0dcc
View commit details
Copy full SHA for e6b0dcc
View code at this point
Browse repository at this point
Converting initial spaces to tabs.
Show description for 2417c23
sbliven
committed
2417c23
View commit details
Copy full SHA for 2417c23
View code at this point
Browse repository at this point
Remove trailing whitespace globally from .java files
Show description for 809312e
sbliven
committed
809312e
View commit details
Copy full SHA for 809312e
View code at this point
Browse repository at this point
Update to remove docstring
abradle
committed
7affe5b
View commit details
Copy full SHA for 7affe5b
View code at this point
Browse repository at this point
Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo
josemduarte
committed
892c03d
View commit details
Copy full SHA for 892c03d
View code at this point
Browse repository at this point
Previous
Next
You can’t perform that action at this time.