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biojava
biojava-structure
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bugfixes-4.2
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Commits on Jun 18, 2018
Revert fix for mmcif files without auth_seq_id column
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Commits on Jun 14, 2018
Fix NullPointer when restoring global state
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Add GlobalsHelper class to manage our global state
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Commits on Jun 12, 2018
Incorporating suggestions from @josemduarte
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Commits on Jun 8, 2018
Set and restore the ChemCompGroupFactory singleton
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Re-download empty structure or chemical component structures
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Make tests for #703 fail with an assertion
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Support initial comments in MMCif files (e.g. those generated by PyMOL)
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Commits on Jun 4, 2018
Add test for #703
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Improving CathInstallation logging
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Commits on Jan 12, 2018
Fix rcsb/symmetry#92: NullPointerException
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Commits on Dec 8, 2017
Back porting fix and test for #716
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Fix and unit test for #715
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Commits on Nov 16, 2017
Backporting bugfix from 5.0 branch
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Commits on Oct 19, 2017
Merge pull request #707 from edlunde-dnastar/linelength424
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Fixing test issues related to v5 and changes in rcsb
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Commits on Oct 18, 2017
Changes for CONECT/LINK
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Commits on Jul 6, 2017
Better http than https
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Updating ligand URLs to latest RCSB convention
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Commits on Jul 5, 2017
Updating dssp urls to latest RCSB convention
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Commits on Feb 18, 2017
Catching empty coordinates earlier in quat sym detection
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Commits on Feb 15, 2017
Fix Quaternary symmetry symmetry detection bug
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Commits on Feb 10, 2017
Better rules for Quaternary symm self-alignments
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Commits on Jan 21, 2017
Now catching empty arrays in getCentroid
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Less verbose logging in AsaCalculator
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Better logging in symmetry package
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Fix for #631
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Commits on Nov 30, 2016
Added exception handler for out-of-bounds errors when parsing lines, usually indicative of misformated lines.
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Commits on Nov 23, 2016
Adding non-standard sg check to pdb parser
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Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.
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Now using the new fields from CrystalBuilder
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Commits on Nov 22, 2016
Some extra rare fields in atom_sites
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Fixing npe introduced in last commit
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Implementing new crystallographic metadata fields.
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Implementing parsing of atom_sites category in mmcif parser/consumer
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