Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Type
/
to search
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
biojava
/
biojava
Public
Notifications
You must be signed in to change notification settings
Fork
397
Star
629
Code
Issues
66
Pull requests
3
Actions
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Security and quality
Insights
Commits
Branch selector
master
User selector
All users
All time
Commit history
Commits on Jul 30, 2026
[maven-release-plugin] prepare for next development iteration
josemduarte
committed
5b29945
View commit details
Copy full SHA for 5b29945
Browse repository at this point
[maven-release-plugin] prepare release biojava-7.2.6
josemduarte
committed
82a6c0a
View commit details
Copy full SHA for 82a6c0a
Browse repository at this point
Disabling tests in release process. Tests are done at CI time
josemduarte
committed
456a774
View commit details
Copy full SHA for 456a774
Browse repository at this point
Merge pull request #1129 from biojava/jd/cifparse-empty-revdate
Show description for 7c20d22
josemduarte
authored
7c20d22
View commit details
Copy full SHA for 7c20d22
Browse repository at this point
Commits on Jul 29, 2026
Bugfix: parsing of mmCIF files with empty database_PDB_rev.date
josemduarte
committed
cb3019d
View commit details
Copy full SHA for cb3019d
Browse repository at this point
Commits on May 5, 2026
Updating after release
josemduarte
committed
e3d58c0
View commit details
Copy full SHA for e3d58c0
Browse repository at this point
[maven-release-plugin] prepare for next development iteration
josemduarte
committed
670525a
View commit details
Copy full SHA for 670525a
Browse repository at this point
[maven-release-plugin] prepare release biojava-7.2.5
josemduarte
committed
5d047ab
View commit details
Copy full SHA for 5d047ab
Browse repository at this point
Adding safeguard, bug introduced in #1116 and reported in Biojava-l
josemduarte
committed
7c3909f
View commit details
Copy full SHA for 7c3909f
Browse repository at this point
Merge pull request #1123 from heuermh/guava-33.6.0-jre
Show description for 3a9f34f
josemduarte
authored
3a9f34f
View commit details
Copy full SHA for 3a9f34f
Browse repository at this point
Merge pull request #1124 from biojava/dependabot/maven/org.apache.logging.log4j-log4j-core-2.25.4
Show description for 693154a
josemduarte
authored
693154a
View commit details
Copy full SHA for 693154a
Browse repository at this point
Duplicate plugin
josemduarte
committed
96de89a
View commit details
Copy full SHA for 96de89a
Browse repository at this point
Bump org.apache.logging.log4j:log4j-core from 2.25.3 to 2.25.4
Show description for 97db9ac
dependabot[bot]
authored
97db9ac
View commit details
Copy full SHA for 97db9ac
Browse repository at this point
Merge pull request #1121 from Pasjonat90D/issue-1079-improvements
Show description for 854ba8b
josemduarte
authored
854ba8b
View commit details
Copy full SHA for 854ba8b
Browse repository at this point
Merge pull request #1122 from biojava/dependabot/maven/org.apache.logging.log4j-log4j-core-2.25.3
Show description for 6ac10bd
josemduarte
authored
6ac10bd
View commit details
Copy full SHA for 6ac10bd
Browse repository at this point
Commits on Apr 27, 2026
Update guava dependency version to 33.6.0-jre
heuermh
committed
01669f8
View commit details
Copy full SHA for 01669f8
Browse repository at this point
Commits on Dec 19, 2025
Bump org.apache.logging.log4j:log4j-core from 2.23.1 to 2.25.3
Show description for ffff768
dependabot[bot]
authored
ffff768
View commit details
Copy full SHA for ffff768
Browse repository at this point
Commits on Dec 14, 2025
Refactor: fix SonarQube S1155 issues (#1079)
Pasjonat90D
committed
c0240dd
View commit details
Copy full SHA for c0240dd
Browse repository at this point
Commits on Dec 10, 2025
Updating after release
josemduarte
committed
51f48cd
View commit details
Copy full SHA for 51f48cd
Browse repository at this point
[maven-release-plugin] prepare for next development iteration
josemduarte
committed
006e5ef
View commit details
Copy full SHA for 006e5ef
Browse repository at this point
[maven-release-plugin] prepare release biojava-7.2.4
josemduarte
committed
f55940c
View commit details
Copy full SHA for f55940c
Browse repository at this point
Merge pull request #1120 from biojava/sym-edgecase
Show description for 8edaed7
josemduarte
authored
8edaed7
View commit details
Copy full SHA for 8edaed7
Browse repository at this point
Commits on Dec 8, 2025
Merge pull request #1119 from Pasjonat90D/fix/use-isempty-instead-of-size-#1079
Show description for 70e9a74
josemduarte
authored
70e9a74
View commit details
Copy full SHA for 70e9a74
Browse repository at this point
Bugfix: edge-case with no equiv residues in alignment wasn't dealt with and led to IllegalArgumentException.
Show description for 423cd86
josemduarte
committed
423cd86
View commit details
Copy full SHA for 423cd86
Browse repository at this point
Commits on Dec 4, 2025
Merge pull request #1118 from JayKamsu/fix-rspec-1940-booleans
Show description for e6ba379
josemduarte
authored
e6ba379
View commit details
Copy full SHA for e6ba379
Browse repository at this point
Commits on Nov 30, 2025
Fix #1079: Use isEmpty() instead of size() == 0
Pasjonat90D
committed
3f039fd
View commit details
Copy full SHA for 3f039fd
Browse repository at this point
Commits on Nov 21, 2025
Fix RSPEC-1940 boolean checks
JasonKamsu
committed
0af196f
View commit details
Copy full SHA for 0af196f
Browse repository at this point
Commits on Nov 13, 2025
Updating after release
josemduarte
committed
94c6ebc
View commit details
Copy full SHA for 94c6ebc
Browse repository at this point
[maven-release-plugin] prepare for next development iteration
josemduarte
committed
515c623
View commit details
Copy full SHA for 515c623
Browse repository at this point
[maven-release-plugin] prepare release biojava-7.2.3
josemduarte
committed
611fcad
View commit details
Copy full SHA for 611fcad
Browse repository at this point
Commits on Nov 12, 2025
Merge pull request #1117 from biojava/jd/issue1116
Show description for c7261df
josemduarte
authored
c7261df
View commit details
Copy full SHA for c7261df
Browse repository at this point
Commits on Nov 8, 2025
Fix for #1116
josemduarte
committed
274a36a
View commit details
Copy full SHA for 274a36a
Browse repository at this point
Commits on Nov 6, 2025
Merge pull request #1115 from biojava/jd/mvncentralplugin
Show description for 21d61b1
josemduarte
authored
21d61b1
View commit details
Copy full SHA for 21d61b1
Browse repository at this point
Commits on Jul 18, 2025
Using new mvn central plugin
josemduarte
committed
7b82b27
View commit details
Copy full SHA for 7b82b27
Browse repository at this point
Commits on Mar 20, 2025
Updating after release
josemduarte
committed
5a699eb
View commit details
Copy full SHA for 5a699eb
Browse repository at this point
Previous
Next
You can’t perform that action at this time.
JasonKamsu