bactopia/modules at master · bactopia/bactopia · GitHub

Name		Name	Last commit message	Last commit date
parent directory ..
abricate		abricate
abritamr/run		abritamr/run
agrvate		agrvate
amrfinderplus/run		amrfinderplus/run
ariba		ariba
bactopia		bactopia
bakta		bakta
blast		blast
bracken		bracken
btyper3		btyper3
busco		busco
checkm/lineagewf		checkm/lineagewf
checkm2		checkm2
clermontyping		clermontyping
clonalframeml		clonalframeml
csvtk		csvtk
deacon		deacon
defensefinder		defensefinder
ectyper		ectyper
eggnog		eggnog
emmtyper		emmtyper
fastani		fastani
gamma		gamma
genomedl		genomedl
genotyphi/parse		genotyphi/parse
gigatyper		gigatyper
gtdbtk		gtdbtk
gubbins		gubbins
hicap		hicap
hpsuissero		hpsuissero
iqtree		iqtree
ismapper		ismapper
kleborate		kleborate
kraken2		kraken2
legsta		legsta
lissero		lissero
mash/dist		mash/dist
mashtree		mashtree
mcroni		mcroni
meningotype		meningotype
merlin/dist		merlin/dist
midas		midas
mlst		mlst
mobsuite/recon		mobsuite/recon
mykrobe/predict		mykrobe/predict
ngmaster		ngmaster
nohuman		nohuman
panaroo/run		panaroo/run
pasty		pasty
pbptyper		pbptyper
phispy		phispy
pirate		pirate
plasmidfinder		plasmidfinder
pneumocat		pneumocat
prokka		prokka
quast		quast
rgi		rgi
roary		roary
sccmec		sccmec
scoary		scoary
seqsero2		seqsero2
seroba/run		seroba/run
shigapass		shigapass
shigatyper		shigatyper
shigeifinder		shigeifinder
sistr		sistr
snippy		snippy
snpdists		snpdists
spatyper		spatyper
srahumanscrubber		srahumanscrubber
ssuissero		ssuissero
staphopiasccmec		staphopiasccmec
staphscan		staphscan
stecfinder		stecfinder
stxtyper		stxtyper
sylph/profile		sylph/profile
tbprofiler		tbprofiler
traitar		traitar