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VividcodeIO
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biojava
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biojava
biojava-structure
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Commits on Sep 8, 2017
Fixing phosphosite urls and changing default url timeout to 30s
josemduarte
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67ca7f2
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Commits on Aug 9, 2017
fixed minor issue with lack of this keyword, re-ran tests
luke czapla
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9a38510
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made max values non-static and created final DEFAULT constants
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Renamed MaxStagger (etc.) to maxStagger (etc.)
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Subclasses not serializable
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Commits on Aug 6, 2017
Structure object unmarked as transient for serialization
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Commits on Aug 5, 2017
Merge remote-tracking branch 'upstream/master'
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Commits on Aug 3, 2017
Merge branch 'master' of github.com:biojava/biojava into serialize
lafita
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Commits on Aug 2, 2017
Fixing test after PDB v5 remediation
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30f46d1
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Commits on Jul 31, 2017
getters and setters all have full sentence JavaDoc
luke czapla
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29ec564
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removed added * import
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Full sentence revision of all JavaDoc and addition of separate error checking method
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Commits on Jul 28, 2017
and the other files
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4908343
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fixed nomenclature for constants
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Add a more complete check to structure serialization test
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5feb565
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Make the secondary structure objects serializable
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Commits on Jul 27, 2017
JavaDoc
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Commits on Jul 26, 2017
Style changes
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removed SNAPSHOT from since annotation
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Serialization support for BasePairParameters class
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final tests using getLength() and others
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Getters and setters for default settings
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3f8b75b
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Proposed revision
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Commits on Jul 25, 2017
just minor forgotten exception line
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Added author line and other suggestions
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d09b552
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Added new getters and refined tests
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9650e13
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Added new getters and refined tests
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9765e76
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Commits on Jul 24, 2017
All classes moved to have an analyze() method and toString() for printing
luke czapla
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46435ec
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Commits on Jul 23, 2017
Updated tests
luke czapla
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dda2351
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switched from SeqRes to Atom seuqence and groups
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9e2ecbc
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Improved the twist calculation to much greater accuracy
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66fbc59
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Commits on Jul 22, 2017
finding base pairs between the same strand for hairpins
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88a2205
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Commits on Jul 21, 2017
Test fix
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f0cdbac
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Moved base pair code into new package basepairs
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e256a92
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Made test use no println, and class use Logger
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