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Commits on Jan 3, 2019

• Automatically convert spaces to tabs

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  sbliven

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Commits on Jul 29, 2018

• Merge branch 'issue712'

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Commits on Jul 28, 2018

• Made a couple of test platform independent

  MikkelVestergaard

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Commits on Mar 15, 2018

• Converting junit3 to 4, thanks intellij

  josemduarte

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Commits on Mar 12, 2018

• Removing deprecations from v4

  josemduarte

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Commits on Mar 7, 2018

• Warnings cleanup

  josemduarte

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Commits on Apr 26, 2017

• Changing all line ending to unix (to match .gitattributes)

  sbliven

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Commits on Sep 8, 2016

• Remove some unimplemented methods in phylo

  lafita

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• Merge alignment and phylo modules #413

  lafita

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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

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• setting default log level to warn

  andreasprlic

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Commits on Jul 1, 2016

• Cleanup - squid:S1858 - "toString()" should never be called on a String object

  

  Mohamed Ezzat

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Commits on Jun 16, 2016

• squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"

  

  Mohamed Ezzat

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Commits on Jun 15, 2016

• squid:S2063 - Comparators should be Serializable

  

  Mohamed Ezzat

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Commits on Apr 24, 2016

• squid:S2178 - Short-circuit logic should be used in boolean contexts

  

  Mohamed Ezzat

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Commits on Mar 10, 2016

• Light cleanup:

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  sbliven

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• Running spacestotabs on recent changes

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  sbliven

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Commits on Mar 9, 2016

• Merge branch 'master' into removeLoadChemCompInfo

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  josemduarte

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• Removing unnecessary casts

  sbliven

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• More whitespace fixes

  sbliven

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• Removing unused imports

  sbliven

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• Converting initial spaces to tabs.

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  sbliven

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• Remove trailing whitespace globally from .java files

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  sbliven

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• Update to remove docstring

  abradle

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• Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo

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• Merge pull request #427 from abradle/master

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  josemduarte

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Commits on Mar 8, 2016

• Fixing a few bugs that arose after loadChemCompInfo removal, #426

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  josemduarte

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• Create a test for issue #288 sub-optimal MSA

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  lafita

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Commits on Mar 7, 2016

• Updates to make serializable for Spark

  abradle

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Commits on Jan 15, 2016

• Fix typo in GuideTreeTest

  lafita

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• Fix broken GuideTreeTest

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  lafita

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Commits on Nov 17, 2015

• Generalize the GuideTree calculation using phylo

  lafita

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Commits on Nov 12, 2015

• Merge commit '248cc08c7fbbdc02249bcac0f10481127b7d3ac7'

  josemduarte

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Commits on Oct 6, 2015

• Converting all line endings to Unix.

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  sbliven

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Commits on Sep 16, 2015

• Massive refactoring: moved alignment data structures from biojava-alignment to biojava-core.

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  paolopavan

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