Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Type
/
to search
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
JavaMuller
/
biojava
Public
forked from
biojava/biojava
Notifications
You must be signed in to change notification settings
Fork
0
Star
0
Code
Pull requests
0
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Pull requests
Actions
Projects
Security and quality
Insights
Commits
Breadcrumbs
History for
biojava
biojava-structure
src
on
release
User selector
All users
All time
Commit history
Commits on Jun 14, 2016
Merge pull request #504 from andreasprlic/bugfixes-4.2
Show description for fbca778
josemduarte
authored
fbca778
View commit details
Copy full SHA for fbca778
View code at this point
Browse repository at this point
Merge pull request #507 from sbliven/pointgroups2
Show description for 349d4e1
andreasprlic
authored
349d4e1
View commit details
Copy full SHA for 349d4e1
View code at this point
Browse repository at this point
Use all repeats to calculate hierarchical axes in internal symmetry
lafita
committed
a07102d
View commit details
Copy full SHA for a07102d
View code at this point
Browse repository at this point
Merge branch 'pointgroups2' of https://github.com/sbliven/biojava-sbliven.git into pointgroups2
lafita
committed
881bda5
View commit details
Copy full SHA for 881bda5
View code at this point
Browse repository at this point
Commit local changes
lafita
committed
b61555a
View commit details
Copy full SHA for b61555a
View code at this point
Browse repository at this point
Fix bug with >3-level deep axes
sbliven
committed
c34ab21
View commit details
Copy full SHA for c34ab21
View code at this point
Browse repository at this point
Fix bug with >3-level deep axes
sbliven
committed
eae3337
View commit details
Copy full SHA for eae3337
View code at this point
Browse repository at this point
Commits on Jun 13, 2016
Storing PdbCode in BioAssemblyIdentifier cannonical representation
Show description for 4bba30b
sbliven
committed
4bba30b
View commit details
Copy full SHA for 4bba30b
View code at this point
Browse repository at this point
Avoid renaming chains when dividing structure into repeats
lafita
committed
3fb85a2
View commit details
Copy full SHA for 3fb85a2
View code at this point
Browse repository at this point
Do not divide internal repeats into chains to calculate QS
lafita
committed
9a24074
View commit details
Copy full SHA for 9a24074
View code at this point
Browse repository at this point
Handle short structures in the CeSymm iteration
lafita
committed
07fe43b
View commit details
Copy full SHA for 07fe43b
View code at this point
Browse repository at this point
Adapt CeSymm code to new SymmetryAxes API
lafita
committed
5591b2d
View commit details
Copy full SHA for 5591b2d
View code at this point
Browse repository at this point
Commits on Jun 10, 2016
removing method that is not in biojava 4.2
andreasprlic
committed
a27b4c7
View commit details
Copy full SHA for a27b4c7
View code at this point
Browse repository at this point
Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.
andreasprlic
committed
f8ac919
View commit details
Copy full SHA for f8ac919
View code at this point
Browse repository at this point
merging in fixes related to PTMs into bug fix branch
andreasprlic
committed
849001f
View commit details
Copy full SHA for 849001f
View code at this point
Browse repository at this point
Commits on Jun 8, 2016
Fix bug with open symmetry axis reconstruction
sbliven
committed
cd7c304
View commit details
Copy full SHA for cd7c304
View code at this point
Browse repository at this point
Commits on Jun 7, 2016
Fix chain ID duplication bug in repeats alignment
lafita
committed
66d8ecb
View commit details
Copy full SHA for 66d8ecb
View code at this point
Browse repository at this point
Fix symmetry axes position bug
Show description for 58f108c
sbliven
committed
58f108c
View commit details
Copy full SHA for 58f108c
View code at this point
Browse repository at this point
Add information for construction of full list of symmetry axes.
Show description for eef9765
sbliven
committed
eef9765
View commit details
Copy full SHA for eef9765
View code at this point
Browse repository at this point
Commits on Jun 6, 2016
Refactor SymmetryAxis class to encapsulate individual axes
sbliven
committed
87586f6
View commit details
Copy full SHA for 87586f6
View code at this point
Browse repository at this point
Commits on Jun 3, 2016
Simplify SymmetryAxis implementation & fix getSymmetryAxes()
sbliven
committed
3f3a2c5
View commit details
Copy full SHA for 3f3a2c5
View code at this point
Browse repository at this point
Adding TestSymmetryAxes prior to refactoring
sbliven
committed
3d47cf2
View commit details
Copy full SHA for 3d47cf2
View code at this point
Browse repository at this point
Commits on Jun 2, 2016
Fix contiguous helices in SSE counting
lafita
authored and
sbliven
committed
3fea9a9
View commit details
Copy full SHA for 3fea9a9
View code at this point
Browse repository at this point
Commits on May 17, 2016
Fix #378 show ligands in symmetry Jmol GUI
lafita
committed
bf59aba
View commit details
Copy full SHA for bf59aba
View code at this point
Browse repository at this point
Use all models sequentially for symmetry analysis
Show description for ff592b8
lafita
committed
ff592b8
View commit details
Copy full SHA for ff592b8
View code at this point
Browse repository at this point
Commits on May 3, 2016
Updated MMCif Parser to handle non-numeric data in the NCS operator field.
abradle
authored and
josemduarte
committed
9f48f17
View commit details
Copy full SHA for 9f48f17
View code at this point
Browse repository at this point
Commits on Apr 29, 2016
Added handling of '?' and other non integer string for the charge.
Show description for f24019f
abradle
authored and
josemduarte
committed
f24019f
View commit details
Copy full SHA for f24019f
View code at this point
Browse repository at this point
Refactored ChargeAdder and fixed bugs where it wasn't adding charges to all groups.
Show description for 22ab7d4
abradle
authored and
josemduarte
committed
22ab7d4
View commit details
Copy full SHA for 22ab7d4
View code at this point
Browse repository at this point
Commits on Apr 27, 2016
Fix #455. Use parsing params for AtomCache
Show description for 348f91d
sbliven
authored and
josemduarte
committed
348f91d
View commit details
Copy full SHA for 348f91d
View code at this point
Browse repository at this point
Commits on Apr 22, 2016
Fix #452 update ECOD javadoc
lafita
committed
1511d93
View commit details
Copy full SHA for 1511d93
View code at this point
Browse repository at this point
Update CATH default and latest versions to 4.0.0 #453
lafita
committed
2e06a8d
View commit details
Copy full SHA for 2e06a8d
View code at this point
Browse repository at this point
Fix bug in internal symmetry levels report
lafita
committed
021d3fc
View commit details
Copy full SHA for 021d3fc
View code at this point
Browse repository at this point
Commits on Apr 11, 2016
Fixing bug in mmcif writing: ins codes were written as ascii code
josemduarte
committed
a191165
View commit details
Copy full SHA for a191165
View code at this point
Browse repository at this point
Commits on Apr 6, 2016
Fix #449 by copying SEQRES to new chains
Show description for bfb6a31
sbliven
committed
bfb6a31
View commit details
Copy full SHA for bfb6a31
View code at this point
Browse repository at this point
Switch DownloadChemCompProvider to use NIO for moving
Show description for e0c1ede
sbliven
committed
e0c1ede
View commit details
Copy full SHA for e0c1ede
View code at this point
Browse repository at this point
Previous
Next
You can’t perform that action at this time.