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JavaMuller
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biojava
biojava-structure-gui
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Commits on Mar 18, 2016
[maven-release-plugin] prepare for next development iteration
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[maven-release-plugin] prepare release biojava-5.0.0-alpha1
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Commits on Mar 10, 2016
[maven-release-plugin] prepare for next development iteration
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[maven-release-plugin] prepare release biojava-4.2.0
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Light cleanup:
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Running spacestotabs on recent changes
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Commits on Mar 9, 2016
Merge branch 'master' into removeLoadChemCompInfo
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Removing unnecessary casts
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More whitespace fixes
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Removing unused imports
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Automatically adding missing @Override
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Converting initial spaces to tabs.
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Removing OpenAstexViewerImpl
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Removing template messages
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Remove trailing whitespace globally from .java files
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Commits on Mar 8, 2016
Merge branch 'master' into removeLoadChemCompInfo
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Merge remote-tracking branch 'biojava/master'
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Removing loadChemCompInfo, some tests don't pass yet
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Commits on Mar 7, 2016
Final CeSymm display options before release
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Commits on Mar 4, 2016
Fix #385. Support BIO: identifiers
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Commits on Mar 3, 2016
Merge branch 'master' of ssh://github.com/biojava/biojava
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Use homologous structure derived matrix HSDM for msa tree building
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Correct significance criteria for internal symmetry
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Commits on Mar 1, 2016
fixing broken demo
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this example was using the wrong Parameter class. fixed
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Commits on Feb 10, 2016
Merge branch 'master' of github.com:biojava/biojava
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adding utility method
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Commits on Feb 5, 2016
Change substitution matrix to SDM for symmetry phylogeny
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Print a summary of internal symmetry in Jmol display
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Commits on Feb 4, 2016
Use HSDM substitution matrix instead of BLOSUM45 in MSA trees
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Change all references to Subunits to Repeats for consistency in CeSymm
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Commits on Feb 3, 2016
Fix bugs in Phylogenetic tree display
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Superimpose freely at the end in case more than one symmetry level
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New feature, show phylogenetic trees for Multiple Structure Alignemnts
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Commits on Feb 1, 2016
Merge branch 'master' into cesymm
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