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@IMCF-Biocev

IMCF-Biocev

About us

The Imaging Methods Core Facility (IMCF) at Biocev focuses on three main areas:

  • Optical (fluorescence) microscopy
  • Electron microscopy
  • Flow cytometry

We provide training and access to cutting-edge instruments, offer consulting on experimental design, sample preparation, data acquisition, and data interpretation. Additionally, we host microscopy courses — check our webpages for updates.

IMCF BIOCEV is part of the Czech-BioImaging infrastructure, enabling open access to advanced imaging technologies and expertise for researchers in the Czech Republic and beyond.

IMCF BIOCEV is part of the Prague node of the Euro-BioImaging infrastructure, which offers open access, services, and training across a wide range of cutting-edge biological and medical imaging technologies.

Links

GitHub

Explore our repositories to access a variety of tools, protocols, and resources focused on imaging and data analysis.

Our GitHub serves as a platform for both private and public projects. Public repositories include custom scripts, macros, and utilities developed to streamline data processing and analysis, as well as selected user projects that have been shared for broader use. These resources are designed to support the research community, offering practical solutions and insights into advanced imaging workflows.

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  1. FLOPA FLOPA Public

    FLOPA is a python based tool for FLIM data opening, processing and analysis. Planned as Napari plugin/widget.

    Jupyter Notebook 2

Repositories

Showing 10 of 12 repositories
  • FLOPA Public

    FLOPA is a python based tool for FLIM data opening, processing and analysis. Planned as Napari plugin/widget.

    IMCF-Biocev/FLOPA's past year of commit activity
    Jupyter Notebook 2 GPL-3.0 0 2 0 Updated Aug 17, 2026
  • Buchel_2025 Public

    Construct FLIM image from .ptu files

    IMCF-Biocev/Buchel_2025's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 15, 2026
  • biapls-dl-materials Public

    Materials for day 3 afternoon session of Intro to BioImaging Analysis with Python for Life Scientists course

    IMCF-Biocev/biapls-dl-materials's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 8, 2026
  • Pacior2025 Public
    IMCF-Biocev/Pacior2025's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 29, 2026
  • scripts_and_macros Public

    Useful scripts and macros in various programming languages

    IMCF-Biocev/scripts_and_macros's past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 1 0 Updated Mar 19, 2026
  • PAPI Public

    PAPI (Python for Analysis and Processing of Images) - Python course

    IMCF-Biocev/PAPI's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Feb 7, 2026
  • .github Public
    IMCF-Biocev/.github's past year of commit activity
    0 0 0 0 Updated Jan 24, 2025
  • Tavakoli2022 Public

    The project measures axonal growth speed and direction during development. Conducted at IMCF Biocev in collaboration with Mitra Tavakoli, Institute of Biotechnology of the Czech Academy of Sciences.

    IMCF-Biocev/Tavakoli2022's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 2, 2024
  • Virus-Infection-Analysis-Workflow Public

    This project aims to analyze the early infection (LT signal) and late expression (VP1) after infection with HBdMEC BK virus. The goal is to quantify the amount of signal inside the nucleus in the green and red channels over time.

    IMCF-Biocev/Virus-Infection-Analysis-Workflow's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 30, 2023
  • NNBA-2023 Public

    The lectures' and practicals' materials for the Neural Networks in Bioimage Analysis course at IMCF Biocev, 2023

    IMCF-Biocev/NNBA-2023's past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated May 7, 2023

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