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@AndersenLab

Andersen Lab

Johns Hopkins University

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Repositories

Showing 10 of 211 repositories
  • assembly-nf Public

    Nextflow pipeline for hifiasm de novo assembly and HiFi long-read sequencing quality control.

    AndersenLab/assembly-nf's past year of commit activity
    Nextflow 0 0 0 0 Updated Sep 17, 2026
  • andersenlab.github.io Public

    Andersen Lab Website

    AndersenLab/andersenlab.github.io's past year of commit activity
    HTML 2 MIT 3 0 2 Updated Sep 16, 2026
  • Ce_pangenome_MS Public

    Scripts, data, figures, and tables for the Caenorhabditis elegans pangenome manuscript.

    AndersenLab/Ce_pangenome_MS's past year of commit activity
    R 0 1 0 0 Updated Sep 16, 2026
  • nemascan-nf Public

    An updated NemaScan nextflow workflow for version 26+

    AndersenLab/nemascan-nf's past year of commit activity
    Python 0 0 0 0 Updated Sep 14, 2026
  • Ce_geneAnno-sh Public

    This is a repository for storing all scripts related to genome assembly, gene annotation, SV calling, GFF/FA file manipulation, functional enrichment analysis, gene set visualization, and syntelog decompression.

    AndersenLab/Ce_geneAnno-sh's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 8, 2026
  • cbriggsae_anthelmintic_drc Public

    Data, scripts, and figures for the C. briggsae anthelmintic dose response (DRC) paper

    AndersenLab/cbriggsae_anthelmintic_drc's past year of commit activity
    R 2 0 0 0 Updated Sep 7, 2026
  • cv Public

    Andersen Curriculum Vitae

    AndersenLab/cv's past year of commit activity
    0 1 0 0 Updated Aug 31, 2026
  • nil-ril-nf Public

    Nextflow pipeline for calling NILs and RILs

    AndersenLab/nil-ril-nf's past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Aug 27, 2026
  • hdr-nf Public

    A reproducible nextflow to call HDRs in selfing nematodes.

    AndersenLab/hdr-nf's past year of commit activity
    R 0 0 0 0 Updated Aug 14, 2026
  • wi-gatk Public

    The new GATK-based pipeline for wild isolate C. elegans strains

    AndersenLab/wi-gatk's past year of commit activity
    Nextflow 1 3 6 0 Updated Aug 11, 2026
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